source("http://bioconductor.org/biocLite.R")
biocLite("ShortRead")

ShortRead

Classes and methods for high-throughput short-read sequencing data.

Bioconductor version: 2.13

Base classes, functions, and methods for representation of high-throughput, short-read sequencing data.

Author: Martin Morgan, Michael Lawrence, Simon Anders

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ShortRead")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ShortRead")

 

PDF	R Script	An introduction to ShortRead
PDF		ShortRead_and_HilbertVis.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, HighThroughputSequencing, QualityControl, Sequencing, Software
Version	1.20.0
In Bioconductor since	BioC 2.3 (R-2.8)
License	Artistic-2.0
Depends	methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.19.34), GenomicRanges(>= 1.13.43), Biostrings(>= 2.29.18), lattice, Rsamtools(>= 1.13.1)
Imports	Biobase, hwriter, zlibbioc, latticeExtra
Suggests	biomaRt, RUnit, GenomicFeatures, yeastNagalakshmi
System Requirements
URL
Depends On Me	chipseq, ChIPseqR, easyRNASeq, EatonEtAlChIPseq, EDASeq, girafe, HTSeqGenie, nucleR, OTUbase, Rolexa, rSFFreader, segmentSeq
Imports Me	ArrayExpressHTS, chipseq, ChIPseqR, ChIPsim, nucleR, OTUbase, QuasR, R453Plus1Toolbox, Rolexa, rSFFreader, RSVSim
Suggests Me	CSAR, DBChIP, Genominator, PICS, PING, R453Plus1Toolbox, Repitools, RnaSeqTutorial, Rsamtools, yeastRNASeq

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ShortRead_1.20.0.tar.gz
Windows Binary	ShortRead_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ShortRead_1.20.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats