source("http://bioconductor.org/biocLite.R")
biocLite("TEQC")

TEQC

Quality control for target capture experiments

Bioconductor version: 2.13

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma

Maintainer: Manuela Hummel <manuela.hummel at crg.es>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("TEQC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TEQC")

 

PDF	R Script	TEQC
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Genetics, HighThroughputSequencing, Microarray, QualityControl, Software
Version	3.2.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL (>= 2)
Depends	methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.5), Rsamtools, hwriter
Imports	Biobase(>= 2.15.1)
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	TEQC_3.2.0.tar.gz
Windows Binary	TEQC_3.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	TEQC_3.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats