To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ffpe")

In most cases, you don't need to download the package archive at all.

ffpe

Quality assessment and control for FFPE microarray expression data

Bioconductor version: 2.13

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author: Levi Waldron

Maintainer: Levi Waldron <lwaldron at hsph.harvard.edu>

Citation (from within R, enter citation("ffpe")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ffpe")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ffpe")

 

PDF R Script ffpe package user guide
PDF   Reference Manual

Details

biocViews Bioinformatics, GeneExpression, Microarray, QualityControl, Software
Version 1.6.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL (>2)
Depends R (>= 2.10.0), TTR, methods
Imports Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc
Suggests genefilter, affy, ffpeExampleData
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ffpe_1.6.0.tar.gz
Windows Binary ffpe_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ffpe_1.6.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center