source("http://bioconductor.org/biocLite.R")
biocLite("ffpe")

ffpe

Quality assessment and control for FFPE microarray expression data

Bioconductor version: 2.13

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author: Levi Waldron

Maintainer: Levi Waldron <lwaldron at hsph.harvard.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ffpe")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ffpe")

 

PDF	R Script	ffpe package user guide
PDF		Reference Manual

Details

biocViews	Bioinformatics, GeneExpression, Microarray, QualityControl, Software
Version	1.6.0
In Bioconductor since	BioC 2.10 (R-2.15)
License	GPL (>2)
Depends	R (>= 2.10.0), TTR, methods
Imports	Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc
Suggests	genefilter, affy, ffpeExampleData
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ffpe_1.6.0.tar.gz
Windows Binary	ffpe_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ffpe_1.6.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats