source("http://bioconductor.org/biocLite.R")
biocLite("STRINGdb")

STRINGdb

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Bioconductor version: 2.13

The STRINGdb package provides a user-friendly interface to the STRING protein-protein interactions database ( http://www.string-db.org ).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Alexander Roth <alexander.roth at gmail.com>, Christian Von Mering <mering at imls.uzh.ch>, Michael Kuhn <michael.kuhn at biotec.tu-dresden.de>, Lars J Jensen <lars.juhl.jensen at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("STRINGdb")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

 

PDF	R Script	STRINGdb Vignette
PDF		Reference Manual

Details

biocViews	Software
Version	1.0.1
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-2
Depends	R (>= 2.14.0), png, sqldf, plyr, igraph, RCurl, plotrix, methods
Imports
Suggests	RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	STRINGdb_1.0.1.tar.gz
Windows Binary	STRINGdb_1.0.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	STRINGdb_1.0.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats