source("http://bioconductor.org/biocLite.R")
biocLite("MiRaGE")

MiRaGE

MiRNA Ranking by Gene Expression

Bioconductor version: 2.13

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MiRaGE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiRaGE")

 

PDF	R Script	How to use MiRaGE Package
PDF		Reference Manual

Details

biocViews	GeneExpression, HighThroughputSequencingData, Microarray, RNAseq, RNAseqData, SAGE, Sequencing, Software
Version	1.4.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL
Depends	R (>= 2.12.1), Biobase(>= 2.16.0)
Imports	AnnotationDbi, BiocGenerics
Suggests	seqinr (>= 3.0.3), biomaRt(>= 2.6.0), GenomicFeatures(>= 1.8.1), Biostrings(>= 2.24.1), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MiRaGE_1.4.0.tar.gz
Windows Binary	MiRaGE_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	MiRaGE_1.4.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats