To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

In most cases, you don't need to download the package archive at all.

AllelicImbalance

Investigates allele specific expression

Bioconductor version: 2.13

Provides a framework for allelic specific expression investigation using RNA-seq data

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

Citation (from within R, enter citation("AllelicImbalance")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AllelicImbalance")

 

PDF R Script AllelicImbalance
PDF   Reference Manual

Details

biocViews AI, ASE, Allelic Imbalance, Genetics, HighThroughputSequencing, Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends GenomicRanges, R (>= 3.0.0)
Imports methods, BiocGenerics, Biostrings, IRanges, GenomicFeatures, Rsamtools, AnnotationDbi
Suggests RUnit, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20120608
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AllelicImbalance_1.0.0.tar.gz
Windows Binary AllelicImbalance_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AllelicImbalance_1.0.0.tgz
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