source("http://bioconductor.org/biocLite.R")
biocLite("VariantTools")

VariantTools

Tools for Working with Genetic Variants

Bioconductor version: 2.13

Tools for detecting, filtering, calling, comparing and plotting variants.

Author: Michael Lawrence, Jeremiah Degenhardt, Robert Gentleman

Maintainer: Michael Lawrence <michafla at gene.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("VariantTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VariantTools")

 

PDF	R Script	Introduction to VariantTools
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneticVariability, Genetics, HighThroughputSequencing, Software
Version	1.4.5
In Bioconductor since	BioC 2.11 (R-2.15)
License	Artistic-2.0
Depends	IRanges(>= 1.19.34), GenomicRanges(>= 1.13.43), VariantAnnotation(>= 1.7.35), methods
Imports	IRanges, Rsamtools(>= 1.11.10), GenomicRanges, BiocGenerics, Biostrings, parallel, gmapR(>= 1.3.8), GenomicFeatures, VariantAnnotation, methods, Matrix, rtracklayer, BiocParallel
Suggests	RUnit, LungCancerLines(>= 0.0.6), RBGL
System Requirements
URL
Depends On Me
Imports Me	HTSeqGenie
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	VariantTools_1.4.5.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats