source("http://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

MinimumDistance

A package for de novo CNV detection in case-parent trios

Bioconductor version: 2.13

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf and Ingo Ruczinski

Maintainer: Robert B Scharpf <rscharpf at jhsph.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MinimumDistance")

 

PDF	R Script	Detection of de novo copy number alterations in case-parent trios
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, CopyNumberVariants, Microarray, SNP, Software
Version	1.6.0
In Bioconductor since	BioC 2.10 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.14), BiocGenerics(>= 0.3.2), IRanges(>= 1.13.30)
Imports	methods, DNAcopy, utils, msm, lattice, BiocGenerics, VanillaICE(>= 1.21.24), ff, Biobase(>= 2.17.8), foreach, oligoClasses(>= 1.21.12), GenomicRanges, matrixStats
Suggests	human610quadv1bCrlmm(>= 1.0.3), SNPchip, RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MinimumDistance_1.6.0.tar.gz
Windows Binary	MinimumDistance_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	MinimumDistance_1.6.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats