source("http://bioconductor.org/biocLite.R")
biocLite("bsseq")

bsseq

Analyze, manage and store bisulfite sequencing data

Bioconductor version: 2.13

Tools for analyzing and visualizing bisulfite sequencing data

Author: Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("bsseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bsseq")

 

PDF	R Script	Analyzing WGBS with bsseq
PDF	R Script	The bsseq user's guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, Software
Version	0.10.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.15), methods, BiocGenerics, IRanges, GenomicRanges, parallel, matrixStats
Imports	scales, stats, graphics, Biobase, locfit
Suggests	RUnit, bsseqData
System Requirements
URL
Depends On Me	bsseqData
Imports Me	DSS
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	bsseq_0.10.0.tar.gz
Windows Binary	bsseq_0.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	bsseq_0.10.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats