source("http://bioconductor.org/biocLite.R")
biocLite("graph")

graph

graph: A package to handle graph data structures

Bioconductor version: 2.13

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("graph")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

 

PDF	R Script	Attributes for Graph Objects
PDF	R Script	clusterGraph and distGraph
PDF	R Script	Graph
PDF	R Script	Graph Design
PDF	R Script	graphBAM and MultiGraph classes
PDF		Reference Manual

Details

biocViews	GraphsAndNetworks, Software
Version	1.40.1
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	Artistic-2.0
Depends	R (>= 2.10), methods
Imports	methods, stats, stats4, tools, utils, BiocGenerics(>= 0.1.11)
Suggests	SparseM (>= 0.36), XML, RBGL, RUnit, cluster
System Requirements
URL
Depends On Me	apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, flowClust, flowMerge, gaggle, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, GSEABase, gwascat, hyperdraw, hypergraph, KEGGgraph, keggorthology, maigesPack, MineICA, NCIgraph, nem, netresponse, NetSAM, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, Rtreemix, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me	biocGraph, biocViews, CAMERA, Category, categoryCompare, DEGraph, flowCore, flowUtils, flowWorkspace, flowWorkspace, gage, GeneNetworkBuilder, GOFunction, GOSim, GOstats, GraphAT, graphite, HTSanalyzeR, KEGGgraph, keggorthology, keggorthology, NCIgraph, nem, openCyto, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, rsbml, Rtreemix, SplicingGraphs, Streamer, topGO
Suggests Me	AnnotationDbi, BiocCaseStudies, Category, DEGraph, EBcoexpress, ecolitk, GeneAnswers, MmPalateMiRNA, rBiopaxParser, rTRM, SPIA

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	graph_1.40.1.tar.gz
Windows Binary	graph_1.40.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	graph_1.40.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats