source("http://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

AnnotationForge

Code for Building Annotation Database Packages

Bioconductor version: 2.13

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Herve Pages

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationForge")

 

PDF	R Script	AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF	R Script	Creating probe packages
PDF		Homo_sapiens.pdf
PDF	R Script	SQLForge: An easy way to create a new annotation package with a standard database schema.
HTML	R Script	Making New Organism Packages
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Infrastructure, Software
Version	1.4.4
In Bioconductor since	BioC 2.11 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.1.13), Biobase(>= 1.17.0), AnnotationDbi(>= 1.19.15), org.Hs.eg.db
Imports	methods, utils, DBI, RSQLite, BiocGenerics, Biobase
Suggests	DBI (>= 0.2-4), RSQLite (>= 0.6-4), XML, RCurl, hgu95av2.db, human.db0, affy, Homo.sapiens, hom.Hs.inp.db, GO.db, BiocStyle, knitr
System Requirements
URL
Depends On Me
Imports Me	GGHumanMethCancerPanelv1.db, GOstats, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, illuminaMousev1.db, illuminaMousev1p1.db, illuminaMousev2.db, illuminaRatv1.db
Suggests Me	AnnotationDbi

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	AnnotationForge_1.4.4.tar.gz
Windows Binary	AnnotationForge_1.4.4.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	AnnotationForge_1.4.4.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats