source("http://bioconductor.org/biocLite.R")
biocLite("rTRM")

rTRM

Identification of transcriptional regulatory modules from PPI networks

Bioconductor version: 2.13

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rTRM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

 

PDF	R Script	Introduction to rTRM
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneRegulation, GraphsAndNetworks, NetworkAnalysis, Software, Transcription
Version	1.0.5
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-3
Depends	R (>= 2.10), igraph, RSQLite, annotate
Imports	AnnotationDbi
Suggests	RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8, org.Mm.eg.db
System Requirements
URL
Depends On Me	rTRMui
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	rTRM_1.0.5.tar.gz
Windows Binary	rTRM_1.0.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	rTRM_1.0.5.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats