source("http://bioconductor.org/biocLite.R")
biocLite("ArrayExpressHTS")

ArrayExpressHTS

ArrayExpress High Throughput Sequencing Processing Pipeline

Bioconductor version: 2.13

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Author: Angela Goncalves, Andrew Tikhonov

Maintainer: Angela Goncalves <filimon at ebi.ac.uk>, Andrew Tikhonov <andrew at ebi.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ArrayExpressHTS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpressHTS")

 

PDF	R Script	ArrayExpressHTS: RNA-Seq Pipeline for transcription profiling experiments
PDF		Reference Manual
Text		NEWS

Details

biocViews	HighThroughputSequencing, RNAseq, Sequencing, Software
Version	1.12.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic License 2.0
Depends	sampling, Rsamtools(>= 1.3.32), snow
Imports	Biobase, BiocGenerics, Biostrings, DESeq, GenomicRanges, Hmisc, IRanges, R2HTML, RColorBrewer, Rsamtools, ShortRead, XML, biomaRt, edgeR, grDevices, graphics, methods, rJava, stats, svMisc, utils, sendmailR, bitops
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ArrayExpressHTS_1.12.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)	ArrayExpressHTS_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats