source("http://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")

ChromHeatMap

Heat map plotting by genome coordinate

Bioconductor version: 2.13

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChromHeatMap")

 

PDF	R Script	Plotting expression data with ChromHeatMap
PDF		Reference Manual

Details

biocViews	Software, Visualization
Version	1.16.0
In Bioconductor since	BioC 2.5 (R-2.10)
License	Artistic-2.0
Depends	R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0), hgu95av2.db
Imports	BiocGenerics, annotate, AnnotationDbi, Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer
Suggests	ALL
System Requirements
URL
Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ChromHeatMap_1.16.0.tar.gz
Windows Binary	ChromHeatMap_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ChromHeatMap_1.16.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats