source("http://bioconductor.org/biocLite.R")
biocLite("ConnectivityMap")

ConnectivityMap

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

Bioconductor version: 2.13

The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.

Author: Paul Shannon

Maintainer: Paul Shannon<pshannon at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ConnectivityMap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ConnectivityMap")

 

PDF		Reference Manual

Details

biocViews	ExperimentData, GeneExpression, Microarray
Version	0.99.11
License	GPL-3
Depends	R (>= 2.15.1)
Imports
Suggests	RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ConnectivityMap_0.99.11.tar.gz
Windows Binary	ConnectivityMap_0.99.11.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ConnectivityMap_0.99.11.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats