source("http://bioconductor.org/biocLite.R")
biocLite("clonotypeR")

clonotypeR

High throughput analysis of T cell antigen receptor sequences

Bioconductor version: 2.13

High throughput analysis of T cell antigen receptor sequences The genes encoding T cell receptors are created by somatic recombination, generating an immense combination of V, (D) and J segments. Additional processes during the recombination create extra sequence diversity between the V an J segments. Collectively, this hyper-variable region is called the CDR3 loop. . The purpose of this package is to process and quantitatively analyse millions of V-CDR3-J combination, called clonotypes, from multiple sequence libraries.

Author: Charles Plessy <plessy at riken.jp>

Maintainer: Charles Plessy <plessy at riken.jp>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clonotypeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clonotypeR")

 

HTML	R Script	clonotypeR User's Guide
PDF		Reference Manual
Text		README
Text		NEWS
Text		LICENSE

Details

biocViews	Bioinformatics, HighThroughputSequencing, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	file LICENSE
Depends	methods
Imports
Suggests	BiocGenerics, edgeR, knitr, pvclust, RUnit, vegan
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	clonotypeR_1.0.0.tar.gz
Windows Binary	clonotypeR_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	clonotypeR_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats