source("http://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

RCytoscape

Display and manipulate graphs in Cytoscape

Bioconductor version: 2.13

Interactvive viewing and exploration of graphs, connecting R to Cytoscape.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCytoscape")

 

PDF	R Script	RCytoscape Overview
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	ConnectTools, GraphsAndNetworks, NetworkVisualization, Software
Version	1.12.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	GPL-2
Depends	R (>= 2.14.0), graph(>= 1.31.0), XMLRPC (>= 0.2.4)
Imports	methods, XMLRPC, BiocGenerics
Suggests	RUnit
System Requirements
URL	http://rcytoscape.systemsbiology.net
Depends On Me
Imports Me	categoryCompare, NCIgraph, RamiGO
Suggests Me	clipper, GeneNetworkBuilder, graphite

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RCytoscape_1.12.0.tar.gz
Windows Binary	RCytoscape_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	RCytoscape_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats