source("http://bioconductor.org/biocLite.R")
biocLite("cghMCR")

cghMCR

Find chromosome regions showing common gains/losses

Bioconductor version: 2.13

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cghMCR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")

 

PDF	R Script	cghMCR findMCR
PDF		Reference Manual

Details

biocViews	CopyNumberVariants, Microarray, Software
Version	1.20.0
In Bioconductor since	BioC 1.8 (R-2.3)
License	LGPL
Depends	methods, DNAcopy, CNTools, limma
Imports	BiocGenerics(>= 0.1.6), stats4
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	cghMCR_1.20.0.tar.gz
Windows Binary	cghMCR_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	cghMCR_1.20.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats