source("http://bioconductor.org/biocLite.R")
biocLite("SeqArray")

SeqArray

Big Data Management of Genome-wide Sequencing Variants

Bioconductor version: 2.13

Big data management of genome-wide variants using the CoreArray library: genotypic data and annotations are stored in an array-oriented manner, offering efficient access of genetic variants using the R language.

Author: Xiuwen Zheng, Stephanie M. Gogarten, Cathy Laurie

Maintainer: Xiuwen Zheng <zhengx at u.washington.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SeqArray")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqArray")

 

PDF		SeqArray-JSM2013.pdf
PDF	R Script	SeqArray: an R/Bioconductor Package for Big Data Management of Genome-Wide Sequencing Variants
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Genetics, Infrastructure, Sequencing, Software
Version	1.2.1
In Bioconductor since	BioC 2.12 (R-3.0)
License	GPL-3
Depends	gdsfmt (>= 1.0.0)
Imports	methods, Biostrings, GenomicRanges, IRanges, VariantAnnotation
Suggests	parallel, snow, BiocGenerics, RUnit, Rcpp
System Requirements
URL	http://corearray.sourceforge.net/tutorials/SeqArray/
Depends On Me	SeqVarTools
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	SeqArray_1.2.1.tar.gz
Windows Binary	SeqArray_1.2.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	SeqArray_1.2.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats