source("http://bioconductor.org/biocLite.R")
biocLite("motifStack")

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Bioconductor version: 2.13

The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.

Author: Jianhong Ou, Michael Brodsky, Scot Wolfe and Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("motifStack")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifStack")

 

PDF	R Script	motifStack Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	GenomicsSequence, SequenceMatching, Software, Visualization
Version	1.6.5
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL (>= 2)
Depends	R (>= 2.15.1), methods, grImport, grid, MotIV, ade4
Imports	XML
Suggests	RUnit, BiocGenerics, MotifDb, RColorBrewer, BiocStyle
System Requirements
URL
Depends On Me	dagLogo
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	motifStack_1.6.5.tar.gz
Windows Binary	motifStack_1.6.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	motifStack_1.6.5.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats