source("http://bioconductor.org/biocLite.R")
biocLite("NetSAM")

NetSAM

Network Seriation And Modularization

Bioconductor version: 2.13

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

Author: Jing Wang <jing.wang.2 at vanderbilt.edu>

Maintainer: Bing Zhang <bing.zhang at vanderbilt.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("NetSAM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NetSAM")

 

PDF	R Script	NetSAM
PDF		Reference Manual

Details

biocViews	Software
Version	1.2.1
In Bioconductor since	BioC 2.13 (R-3.0)
License	LGPL
Depends	R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0)
Imports	methods
Suggests	RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	NetSAM_1.2.1.tar.gz
Windows Binary	NetSAM_1.2.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	NetSAM_1.2.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats