source("http://bioconductor.org/biocLite.R")
biocLite("triform")

triform

Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data

Bioconductor version: 2.13

The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Author: Karl Kornacker Developer [aut], Tony Håndstad Developer [aut, cre]

Maintainer: Tony Håndstad Developer <tony.handstad at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("triform")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("triform")

 

PDF	R Script	Triform users guide
PDF		Reference Manual

Details

biocViews	ChIPseq, Sequencing, Software
Version	1.4.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL-2
Depends	R (>= 2.11.0), IRanges, yaml
Imports	IRanges, yaml, BiocGenerics
Suggests	RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	triform_1.4.0.tar.gz
Windows Binary	triform_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	triform_1.4.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats