source("http://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

SeqVarTools

Tools for variant data

Bioconductor version: 2.13

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng

Maintainer: Stephanie M. Gogarten <sdmorris at u.washington.edu>, Xiuwen Zheng <zhengx at u.washington.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqVarTools")

 

PDF	R Script	Introduction to SeqVarTools
PDF		Reference Manual

Details

biocViews	GeneticVariability, Genetics, HighThroughputSequencing, SNP, Sequencing, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-3
Depends	SeqArray(>= 1.1.1)
Imports	methods, GenomicRanges, IRanges, GWASExactHW
Suggests	BiocGenerics, RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	SeqVarTools_1.0.0.tar.gz
Windows Binary	SeqVarTools_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	SeqVarTools_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats