source("http://bioconductor.org/biocLite.R")
biocLite("oligoClasses")

oligoClasses

Classes for high-throughput arrays supported by oligo and crlmm

Bioconductor version: 2.13

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.

Author: Benilton Carvalho and Robert Scharpf

Maintainer: Benilton Carvalho <Benilton.Carvalho at cancer.org.uk> and Robert Scharpf <rscharpf at jhsph.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("oligoClasses")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oligoClasses")

 

PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.24.0
In Bioconductor since	BioC 2.1 (R-2.6)
License	GPL (>= 2)
Depends	R (>= 2.14), BiocGenerics(>= 0.3.2)
Imports	BiocGenerics, Biobase(>= 2.17.8), methods, graphics, IRanges(>= 1.13.30), GenomicRanges, Biostrings(>= 2.23.6), affyio(>= 1.23.2), ff, foreach, BiocInstaller, utils
Suggests	RSQLite, hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm(>= 1.0.7), genomewidesnp5Crlmm(>= 1.0.6), crlmm, SNPchip, VanillaICE, RUnit, human370v1cCrlmm
System Requirements
URL
Depends On Me	cn.farms, crlmm, mBPCR, oligo, pd.081229.hg18.promoter.medip.hx1, pd.2006.07.18.hg18.refseq.promoter, pd.2006.07.18.mm8.refseq.promoter, pd.2006.10.31.rn34.refseq.promoter, pd.ag, pd.aragene.1.0.st, pd.aragene.1.1.st, pd.atdschip.tiling, pd.ath1.121501, pd.barley1, pd.bovgene.1.0.st, pd.bovgene.1.1.st, pd.bovine, pd.bsubtilis, pd.cangene.1.0.st, pd.cangene.1.1.st, pd.canine, pd.canine.2, pd.celegans, pd.charm.hg18.example, pd.chicken, pd.citrus, pd.cotton, pd.cyngene.1.0.st, pd.cyngene.1.1.st, pd.cyrgene.1.0.st, pd.cyrgene.1.1.st, pd.cytogenetics.array, pd.drosgenome1, pd.drosophila.2, pd.e.coli.2, pd.ecoli, pd.ecoli.asv2, pd.equgene.1.0.st, pd.equgene.1.1.st, pd.feinberg.hg18.me.hx1, pd.feinberg.mm8.me.hx1, pd.felgene.1.0.st, pd.felgene.1.1.st, pd.genomewidesnp.5, pd.genomewidesnp.6, pd.hc.g110, pd.hg.focus, pd.hg.u133.plus.2, pd.hg.u133a, pd.hg.u133a.2, pd.hg.u133a.tag, pd.hg.u133b, pd.hg.u219, pd.hg.u95a, pd.hg.u95av2, pd.hg.u95b, pd.hg.u95c, pd.hg.u95d, pd.hg.u95e, pd.hg18.60mer.expr, pd.ht.hg.u133.plus.pm, pd.ht.hg.u133a, pd.ht.mg.430a, pd.hu6800, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, pd.hugene.1.1.st.v1, pd.hugene.2.0.st, pd.hugene.2.1.st, pd.maize, pd.mapping250k.nsp, pd.mapping250k.sty, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.medicago, pd.mg.u74a, pd.mg.u74av2, pd.mg.u74b, pd.mg.u74bv2, pd.mg.u74c, pd.mg.u74cv2, pd.mirna.1.0, pd.mirna.2.0, pd.mirna.3.0, pd.mirna.3.1, pd.moe430a, pd.moe430b, pd.moex.1.0.st.v1, pd.mogene.1.0.st.v1, pd.mogene.1.1.st.v1, pd.mogene.2.0.st, pd.mogene.2.1.st, pd.mouse430.2, pd.mouse430a.2, pd.mu11ksuba, pd.mu11ksubb, pd.ovigene.1.0.st, pd.ovigene.1.1.st, pd.pae.g1a, pd.plasmodium.anopheles, pd.poplar, pd.porcine, pd.porgene.1.0.st, pd.porgene.1.1.st, pd.rae230a, pd.rae230b, pd.raex.1.0.st.v1, pd.ragene.1.0.st.v1, pd.ragene.1.1.st.v1, pd.ragene.2.0.st, pd.ragene.2.1.st, pd.rat230.2, pd.rcngene.1.1.st, pd.rg.u34a, pd.rg.u34b, pd.rg.u34c, pd.rhegene.1.0.st, pd.rhegene.1.1.st, pd.rhesus, pd.rice, pd.rjpgene.1.1.st, pd.rn.u34, pd.s.aureus, pd.soybean, pd.soygene.1.1.st, pd.sugar.cane, pd.tomato, pd.u133.x3p, pd.vitis.vinifera, pd.wheat, pd.x.laevis.2, pd.x.tropicalis, pd.xenopus.laevis, pd.yeast.2, pd.yg.s98, pd.zebgene.1.0.st, pd.zebgene.1.1.st, pd.zebrafish, waveTiling
Imports Me	affycoretools, ArrayTV, charm, frma, ITALICS, MinimumDistance, SNPchip, VanillaICE
Suggests Me	BiocGenerics, hapmapsnp6

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	oligoClasses_1.24.0.tar.gz
Windows Binary	oligoClasses_1.24.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	oligoClasses_1.24.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats