source("http://bioconductor.org/biocLite.R")
biocLite("snpStats")

snpStats

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 2.13

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <dc208 at cam.ac.uk>

Maintainer: David Clayton <dc208 at cam.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("snpStats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snpStats")

 

PDF	R Script	Data input
PDF	R Script	Imputation and meta-analysis
PDF	R Script	LD statistics
PDF	R Script	Principal components analysis
PDF	R Script	snpMatrix-differences
PDF	R Script	snpStats introduction
PDF	R Script	TDT tests
PDF		Reference Manual

Details

biocViews	GeneticVariability, Microarray, SNP, Software
Version	1.12.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL-3
Depends	R (>= 2.10.0), survival, methods, Matrix
Imports	graphics, grDevices, methods, stats, survival, utils, Matrix, BiocGenerics
Suggests	hexbin
System Requirements
URL
Depends On Me	GGBase, GGdata, ggtut, gwascat
Imports Me	FunciSNP, GGtools
Suggests Me	crlmm, GWASTools, VariantAnnotation

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	snpStats_1.12.0.tar.gz
Windows Binary	snpStats_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	snpStats_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats