source("http://bioconductor.org/biocLite.R")
biocLite("cobindR")

cobindR

Finding Co-occuring motifs of transcription factor binding sites

Bioconductor version: 2.13

Finding and analysing co-occuring motifs of transcription factor binding sites in groups of genes

Author: Manuela Benary, Stefan Kroeger, Yuehien Lee, Robert Lehmann

Maintainer: Manuela Benary <manuela.benary at cms.hu-berlin.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cobindR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cobindR")

 

PDF	R Script	Using cobindR
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBiology, ChiPseq, MultipleComparisons, SequenceMatching, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends
Imports	yaml, seqinr, Biostrings, biomaRt, BSgenome, methods, gmp, mclust, rtfbs, gplots, IRanges
Suggests	RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	cobindR_1.0.0.tar.gz
Windows Binary	cobindR_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	cobindR_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats