source("http://bioconductor.org/biocLite.R")
biocLite("CNORfuzzy")

CNORfuzzy

Addon to CellNOptR: Fuzzy Logic

Bioconductor version: 2.13

This package is an extension to CellNOptR. It contains additional functionality needed to simulate and train a prior knowledge network to experimental data using constrained fuzzy logic (cFL, rather than Boolean logic as is the case in CellNOptR). Additionally, this package will contain functions to use for the compilation of multiple optimization results (either Boolean or cFL).

Author: M. Morris, T. Cokelaer

Maintainer: T. Cokelaer <cokelaer at ebi.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNORfuzzy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfuzzy")

 

PDF		CNORfuzzy-vignette-FullAnalysis.pdf
PDF		CNORfuzzy-vignette-FullAnalysis2.pdf
PDF		CNORfuzzy-vignette-FullAnalysis3.pdf
PDF	R Script	Main vignette:Playing with networks using CNORfuzzyl
PDF		tf1.pdf
PDF		tf2.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.4.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL-2
Depends	R (>= 2.15.0), CellNOptR(>= 1.4.0), nloptr (>= 0.8.5)
Imports
Suggests	xtable, Rgraphviz, RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CNORfuzzy_1.4.0.tar.gz
Windows Binary	CNORfuzzy_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CNORfuzzy_1.4.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats