source("http://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")

ChIPseqR

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: 2.13

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at well.ox.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPseqR")

 

PDF	R Script	Introduction to ChIPseqR
PDF		Reference Manual

Details

biocViews	Bioinformatics, ChIPseq, Infrastructure, Software
Version	1.16.0
In Bioconductor since	BioC 2.5 (R-2.10)
License	GPL (>= 2)
Depends	R (>= 2.10.0), methods, BiocGenerics, ShortRead
Imports	Biostrings, fBasics, GenomicRanges, graphics, grDevices, HilbertVis, IRanges, methods, ShortRead, stats, timsac, utils
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System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ChIPseqR_1.16.0.tar.gz
Windows Binary	ChIPseqR_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ChIPseqR_1.16.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats