source("http://bioconductor.org/biocLite.R")
biocLite("CellNOptR")

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

Bioconductor version: 2.13

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve

Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CellNOptR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CellNOptR")

 

PDF		CellNOptR0_1flowchart.pdf
PDF		Fig2.pdf
PDF		Fig3.pdf
PDF		Fig4.pdf
PDF		Fig6.pdf
PDF		Fig7.pdf
PDF		Fig8.pdf
PDF	R Script	Main vignette:Playing with networks using CellNOptR
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Version	1.8.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL-3
Depends	R (>= 2.15.0), RBGL, graph, methods, hash, ggplot2, RCurl, Rgraphviz, XML
Imports
Suggests	RUnit, BiocGenerics, igraph
System Requirements	Graphviz version >= 2.2
URL
Depends On Me	CNORdt, CNORfeeder, CNORfuzzy, CNORode
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CellNOptR_1.8.0.tar.gz
Windows Binary	CellNOptR_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CellNOptR_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats