source("http://bioconductor.org/biocLite.R")
biocLite("HTSeqGenie")

HTSeqGenie

A NGS analysis pipeline.

Bioconductor version: 2.13

Libraries to perform NGS analysis.

Author: Gregoire Pau, Jens Reeder

Maintainer: Gregoire Pau <pau.gregoire at gene.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HTSeqGenie")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HTSeqGenie")

 

PDF	R Script	HTSeqGenie
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	3.12.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	Artistic-2.0
Depends	R (>= 3.0.0), ShortRead(>= 1.14.4), parallel, BiocParallel, hwriter, Cairo, tools, rtracklayer, gmapR(>= 1.1.10)
Imports	BiocGenerics(>= 0.2.0), IRanges(>= 1.14.3), GenomicRanges(>= 1.7.12), Rsamtools(>= 1.8.5), Biostrings(>= 2.24.1), chipseq(>= 1.6.1), rtracklayer(>= 1.17.19), GenomicFeatures(>= 1.9.31), VariantTools(>= 1.3.6), VariantAnnotation(>= 1.5.41)
Suggests	TxDb.Hsapiens.UCSC.hg19.knownGene, GenomicFeatures, LungCancerLines, org.Hs.eg.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	HTSeqGenie_3.12.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats