source("http://bioconductor.org/biocLite.R")
biocLite("CNORfeeder")

CNORfeeder

Integration of CellNOptR to add missing links

Bioconductor version: 2.13

This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods, and uses information on physical interactions of proteins to guide and validate the integration of links.

Author: F.Eduati

Maintainer: F.Eduati <eduati at ebi.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNORfeeder")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfeeder")

 

PDF		DDN.pdf
PDF		integratedModel.pdf
PDF	R Script	Main vignette:Playing with networks using CNORfeeder
PDF		optModel.pdf
PDF		SimResultsT1_1.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, CellBasedAssays, CellBiology, NetworkInference, Proteomics, Software
Version	1.2.0
In Bioconductor since	BioC 2.12 (R-3.0)
License	GPL-3
Depends	R (>= 2.15.0), CellNOptR(>= 1.4.0), graph
Imports
Suggests	minet, catnet, igraph, Rgraphviz, RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CNORfeeder_1.2.0.tar.gz
Windows Binary	CNORfeeder_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CNORfeeder_1.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats