source("http://bioconductor.org/biocLite.R")
biocLite("simpleaffy")

simpleaffy

Very simple high level analysis of Affymetrix data

Bioconductor version: 2.13

Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures...

Author: Crispin J Miller

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("simpleaffy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simpleaffy")

 

PDF		QCandSimpleaffy.pdf
PDF	R Script	simpleaffy primer
PDF		Reference Manual
Text		README

Details

biocViews	Annotation, Bioinformatics, DataImport, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Transcription, Visualization
Version	2.38.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	GPL (>= 2)
Depends	R (>= 2.0.0), methods, utils, grDevices, graphics, stats, BiocGenerics(>= 0.1.12), Biobase, affy(>= 1.33.6), genefilter, gcrma
Imports	methods, utils, grDevices, graphics, stats, BiocGenerics, Biobase, affy, genefilter, gcrma
Suggests
System Requirements
URL	http://www.bioconductor.org http://bioinformatics.picr.man.ac.uk/simpleaffy/
Depends On Me	yaqcaffy
Imports Me	affyQCReport, arrayMvout, arrayQualityMetrics
Suggests Me	AffyExpress, ArrayTools

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	simpleaffy_2.38.0.tar.gz
Windows Binary	simpleaffy_2.38.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	simpleaffy_2.38.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats