To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiocStyle")

In most cases, you don't need to download the package archive at all.

BiocStyle

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see BiocStyle.

Standard styles for vignettes and other Bioconductor documents

Bioconductor version: 3.4

Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.

Author: Andrzej Oleś, Martin Morgan, Wolfgang Huber

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocStyle")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiocStyle")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocStyle")

PDF	R Script	Bioconductor LaTeX Style
PDF	R Script	Bioconductor LaTeX Style 2.0
HTML	R Script	Bioconductor style for HTML documents
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	2.2.1
In Bioconductor since	BioC 2.13 (R-3.0) (3.5 years)
License	Artistic-2.0
Depends
Imports	stats, utils
LinkingTo
Suggests	base64enc, knitr (>= 1.12), rmarkdown (>= 1.2), BiocGenerics, RUnit, yaml, htmltools
SystemRequirements
Enhances
URL	https://github.com/Bioconductor/BiocStyle
BugReports	https://github.com/Bioconductor/BiocStyle/issues
Depends On Me	curatedBreastData
Imports Me	BubbleTree, PathoStat, Rqc
Suggests Me	ABAData, ABAEnrichment, affycoretools, AllelicImbalance, AMOUNTAIN, AneuFinder, AnnotationDbi, AnnotationForge, AnnotationHub, AnnotationHubData, annotatr, arrayQualityMetrics, ASGSCA, ASpli, BaalChIP, bacon, bamsignals, BayesPeak, baySeq, beadarray, BeadDataPackR, BgeeDB, bigmelon, bigmemoryExtras, bioassayR, bioCancer, BiocParallel, BiocWorkflowTools, biomaRt, biomformat, biosigner, BitSeq, blima, blimaTestingData, BPRMeth, BrowserViz, BrowserVizDemo, bsseq, CAFE, CancerInSilico, CAnD, Cardinal, CardinalWorkflows, ccrepe, cellity, CellMapper, CellMapperData, cellTree, CexoR, ChemmineDrugs, ChemmineOB, ChemmineR, Chicago, ChIPComp, chipenrich, ChIPpeakAnno, ChIPQC, ChIPseeker, chromstaR, ClassifyR, cleanUpdTSeq, cleaver, clipper, clusterExperiment, clusterProfiler, ClusterSignificance, CNEr, CNPBayes, coMET, compcodeR, CONFESS, consensusSeekeR, contiBAIT, conumee, CopyhelpeR, CopywriteR, CoRegNet, COSMIC.67, cosmiq, CountClust, covRNA, cpvSNP, CRISPRseek, CrispRVariants, ctsGE, curatedBladderData, curatedCRCData, curatedMetagenomicData, curatedOvarianData, CVE, dada2, dagLogo, DAPAR, DChIPRep, DEFormats, DEGreport, derfinder, derfinderHelper, derfinderPlot, DESeq2, DEXSeq, DiffBind, DmelSGI, DNABarcodes, doppelgangR, DOSE, DRIMSeq, dSimer, DSS, dupRadar, easyRNASeq, EBImage, EDASeq, EGSEA, eiR, ELMER, ELMER.data, EmpiricalBrownsMethod, EnrichmentBrowser, ensembldb, epivizr, epivizrData, epivizrServer, epivizrStandalone, erma, EWCE, ExperimentHub, ExperimentHubData, FamAgg, fCCAC, fCI, FindMyFriends, flowcatchR, flowMap, FlowSOM, fmcsR, FourCSeq, furrowSeg, genbankr, genefilter, GeneOverlap, geneplast, geneXtendeR, GenoGAM, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicInteractions, GenomicRanges, GenomicTuples, genoset, GenVisR, GeuvadisTranscriptExpr, ggbio, Glimma, GMRP, GOexpress, GoogleGenomics, GOpro, GOSemSim, gQTLBase, gQTLstats, graphite, GreyListChIP, GRmetrics, groHMM, GSAR, GSE62944, GUIDEseq, Gviz, Harman, HarmanData, HD2013SGI, HDF5Array, HelloRanges, HelloRangesData, Hiiragi2013, HiTC, hpar, HTSFilter, HumanAffyData, iGC, IHW, IHWpaper, illuminaio, imageHTS, Imetagene, immunoClust, InPAS, INSPEcT, InteractionSet, IONiseR, isomiRs, IVAS, JctSeqData, JunctionSeq, Linnorm, LowMACA, lpsymphony, M3D, mAPKL, MatrixRider, matter, MBASED, MBttest, mdgsa, MEAL, MEDIPS, meshes, messina, MetaboSignal, metagene, MethPed, MethylAid, MethylAidData, MethylMix, minfi, minionSummaryData, miRcomp, missMethyl, MMDiff2, MODA, mogsa, MoonlightR, motifbreakR, motifStack, mQTL.NMR, MSnbase, MSnID, msPurity, msqc1, MultiAssayExperiment, MutationalPatterns, mygene, myvariant, mzR, NanoStringDiff, NanoStringQCPro, NarrowPeaks, netbiov, nethet, netprioR, nondetects, normr, npGSEA, nucleoSim, oligo, omicade4, OmicsMarkeR, OncoScore, OncoSimulR, OperaMate, Oscope, PAA, PANTHER.db, PanVizGenerator, parathyroidSE, PasillaTranscriptExpr, Path2PPI, paxtoolsr, Pbase, pcaExplorer, PCAN, PCHiCdata, PGA, PGPC, philr, phyloseq, Pi, Pigengene, plethy, Polyfit, pqsfinder, profileScoreDist, pRoloc, pRolocGUI, PROPER, Prostar, ProteomicsAnnotationHubData, proteoQC, PSEA, PureCN, PWMEnrich, qcmetrics, QDNAseq, qpgraph, qsea, quantro, QuasR, R3CPET, rain, Rcade, rcellminer, rcellminerData, rCGH, RCyjs, rDGIdb, ReactomePA, recount, recoup, RefNet, regioneR, regionReport, regsplice, ReQON, RforProteomics, rfPred, RGraph2js, RGSEA, rhdf5, Rhtslib, RiboProfiling, riboSeqR, RNAprobR, rnaseqcomp, RnaSeqSampleSize, RnaSeqSampleSizeData, Rnits, rols, ropls, rpx, Rsamtools, RTCGAToolbox, RUVcorr, RUVSeq, sangerseqR, sapFinder, scater, SCLCBam, scran, scRNAseq, segmentSeq, seqPattern, seqplots, SeqVarTools, SGSeq, shinyMethyl, ShortRead, SigCheck, SigFuge, similaRpeak, SIMLR, simulatorZ, sincell, Single.mTEC.Transcriptomes, SNPediaR, SNPhood, SNPhoodData, soGGi, specL, SpidermiR, SPLINTER, SSPA, STAN, StarBioTrek, STATegRa, statTarget, SummarizedExperiment, sva, SVAPLSseq, switchde, synapter, systemPipeR, systemPipeRdata, TCGAbiolinks, TFBSTools, tigre, TimerQuant, TPP, tracktables, trackViewer, transcriptR, traseR, TRONCO, TurboNorm, TVTB, variancePartition, VariantAnnotation, VariantFiltering, vsn, wavClusteR, XBSeq, xcms, yamss, YAPSA, yriMulti, zebrafishRNASeq
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	BiocStyle_2.2.1.tar.gz
Windows Binary	BiocStyle_2.2.1.zip
Mac OS X 10.9 (Mavericks)	BiocStyle_2.2.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/BiocStyle/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/BiocStyle/
Package Downloads Report	Download Stats

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