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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Cardinal")
In most cases, you don't need to download the package archive at all.
Cardinal
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see Cardinal.
A mass spectrometry imaging toolbox for statistical analysis
Bioconductor version: 3.4
Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.
Author: Kylie A. Bemis <k.bemis at northeastern.edu>
Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>
Citation (from within R,
enter citation("Cardinal")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Cardinal")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Cardinal")
| R Script | Cardinal design and development | |
| R Script | Cardinal: Analytic tools for mass spectrometry imaging | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Classification, Clustering, ImagingMassSpectrometry, Infrastructure, Lipidomics, MassSpectrometry, Normalization, Proteomics, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2 years) |
| License | Artistic-2.0 |
| Depends | BiocGenerics, Biobase, graphics, methods, stats, ProtGenerics |
| Imports | grid, irlba, lattice, signal, sp, stats4, utils |
| LinkingTo | |
| Suggests | BiocStyle, testthat |
| SystemRequirements | |
| Enhances | |
| URL | http://www.cardinalmsi.org |
| Depends On Me | CardinalWorkflows |
| Imports Me | |
| Suggests Me | matter |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Cardinal_1.6.0.tar.gz |
| Windows Binary | Cardinal_1.6.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | Cardinal_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Cardinal/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/Cardinal/ |
| Package Downloads Report | Download Stats |
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