To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("nucleoSim")
In most cases, you don't need to download the package archive at all.
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see nucleoSim.
Bioconductor version: 3.4
This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform.
Author: Rawane Samb [aut], Astrid DeschĂȘnes [cre, aut], Pascal Belleau [aut], Arnaud Droit [aut]
Maintainer: Astrid Deschenes <Astrid-Louise.Deschenes at crchudequebec.ulaval.ca>
Citation (from within R,
enter citation("nucleoSim")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("nucleoSim")
HTML | R Script | Generate synthetic nucleosome maps |
Reference Manual | ||
Text | NEWS |
biocViews | Alignment, Genetics, Sequencing, Software, StatisticalMethod |
Version | 1.2.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
License | Artistic-2.0 |
Depends | |
Imports | stats, IRanges, S4Vectors, graphics |
LinkingTo | |
Suggests | BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit |
SystemRequirements | |
Enhances | |
URL | https://github.com/arnauddroitlab/nucleoSim |
BugReports | https://github.com/arnauddroitlab/nucleoSim/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | nucleoSim_1.2.0.tar.gz |
Windows Binary | nucleoSim_1.2.0.zip |
Mac OS X 10.9 (Mavericks) | nucleoSim_1.2.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/nucleoSim/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/nucleoSim/ |
Package Downloads Report | Download Stats |
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