To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HTSFilter")

In most cases, you don't need to download the package archive at all.

HTSFilter

   

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see HTSFilter.

Filter replicated high-throughput transcriptome sequencing data

Bioconductor version: 3.4

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

Author: Andrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic

Maintainer: Andrea Rau <andrea.rau at jouy.inra.fr>

Citation (from within R, enter citation("HTSFilter")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HTSFilter")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HTSFilter")

 

PDF R Script HTSFilter Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, Normalization, Preprocessing, RNASeq, Sequencing, Software
Version 1.14.1
In Bioconductor since BioC 2.12 (R-3.0) (4 years)
License Artistic-2.0
Depends R (>= 3.3.0)
Imports edgeR(>= 3.9.14), DESeq2(>= 1.10.1), DESeq(>= 1.22.1), BiocParallel(>= 1.4.3), Biobase, utils, stats, grDevices, graphics, methods
LinkingTo
Suggests EDASeq(>= 2.1.4), BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HTSFilter_1.14.1.tar.gz
Windows Binary HTSFilter_1.14.1.zip
Mac OS X 10.9 (Mavericks) HTSFilter_1.14.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/HTSFilter/tree/release-3.4
Package Short Url http://bioconductor.org/packages/HTSFilter/
Package Downloads Report Download Stats

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