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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")
In most cases, you don't need to download the package archive at all.
GOSemSim
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This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see GOSemSim.
GO-terms Semantic Similarity Measures
Bioconductor version: 3.4
The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.
Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Alexey Stukalov and Chuanle Xiao.
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
Citation (from within R,
enter citation("GOSemSim")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")
Documentation
| HTML | R Script | An introduction to GOSemSim |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Clustering, GO, Network, Pathways, Software |
| Version | 2.0.4 |
| In Bioconductor since | BioC 2.4 (R-2.9) (8 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0) |
| Imports | AnnotationDbi, GO.db, methods, utils |
| LinkingTo | Rcpp |
| Suggests | AnnotationHub, BiocInstaller, BiocStyle, clusterProfiler, DOSE, knitr, org.Hs.eg.db, testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://guangchuangyu.github.io/GOSemSim |
| BugReports | https://github.com/GuangchuangYu/GOSemSim/issues |
| Depends On Me | tRanslatome |
| Imports Me | clusterProfiler, DOSE, meshes, Rcpi |
| Suggests Me | SemDist |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GOSemSim_2.0.4.tar.gz |
| Windows Binary | GOSemSim_2.0.4.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | GOSemSim_2.0.4.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GOSemSim/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/GOSemSim/ |
| Package Downloads Report | Download Stats |
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