To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("plethy")
In most cases, you don't need to download the package archive at all.
plethy
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see plethy.
R framework for exploration and analysis of respirometry data
Bioconductor version: 3.4
This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.
Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]
Maintainer: Daniel Bottomly <bottomly at ohsu.edu>
Citation (from within R,
enter citation("plethy")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("plethy")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plethy")
| R Script | plethy | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews |
| Version | 1.12.1 |
| In Bioconductor since | BioC 2.13 (R-3.0) (3.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.1.0), methods, DBI (>= 0.5-1), RSQLite (>= 1.1), BiocGenerics, S4Vectors |
| Imports | Streamer, IRanges, reshape2, plyr, RColorBrewer, ggplot2, Biobase |
| LinkingTo | |
| Suggests | RUnit, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | plethy_1.12.1.tar.gz |
| Windows Binary | plethy_1.12.1.zip |
| Mac OS X 10.9 (Mavericks) | plethy_1.12.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/plethy/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/plethy/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
