To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HD2013SGI")

In most cases, you don't need to download the package archive at all.

HD2013SGI

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see HD2013SGI.

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Bioconductor version: 3.4

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

Author: Bernd Fischer

Maintainer: Bernd Fischer <b.fischer at dkfz.de>

Citation (from within R, enter citation("HD2013SGI")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HD2013SGI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HD2013SGI")

PDF	R Script	HD2013SGI
PDF		Reference Manual

Details

biocViews	CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData
Version	1.14.0
License	Artistic-2.0
Depends	R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements	GNU make
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	HD2013SGI_1.14.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Package Short Url	http://bioconductor.org/packages/HD2013SGI/
Package Downloads Report	Download Stats

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