- Home
- Bioconductor 3.4
- Software Packages
- rnaseqcomp
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rnaseqcomp")
In most cases, you don't need to download the package archive at all.
rnaseqcomp
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see rnaseqcomp.
Benchmarks for RNA-seq Quantification Pipelines
Bioconductor version: 3.4
Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.
Author: Mingxiang Teng and Rafael A. Irizarry
Maintainer: Mingxiang Teng <tengmx at gmail.com>
Citation (from within R,
enter citation("rnaseqcomp")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rnaseqcomp")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rnaseqcomp")
| R Script | The rnaseqcomp user's guide | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | QualityControl, RNASeq, Software, Visualization |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.2.0) |
| Imports | RColorBrewer, methods |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/tengmx/rnaseqcomp |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | rnaseqcomp_1.4.0.tar.gz |
| Windows Binary | rnaseqcomp_1.4.0.zip |
| Mac OS X 10.9 (Mavericks) | rnaseqcomp_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/rnaseqcomp/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/rnaseqcomp/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
