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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAprobR")
In most cases, you don't need to download the package archive at all.
RNAprobR
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see RNAprobR.
An R package for analysis of massive parallel sequencing based RNA structure probing data
Bioconductor version: 3.4
This package facilitates analysis of Next Generation Sequencing data for which positional information with a single nucleotide resolution is a key. It allows for applying different types of relevant normalizations, data visualization and export in a table or UCSC compatible bedgraph file.
Author: Lukasz Jan Kielpinski [aut], Nikos Sidiropoulos [cre, aut], Jeppe Vinther [aut]
Maintainer: Nikos Sidiropoulos <nikos.sidiro at gmail.com>
Citation (from within R,
enter citation("RNAprobR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAprobR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RNAprobR")
| R Script | RNAprobR: An R package for analysis of the massive parallel sequencing based methods of RNA structure probing | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Coverage, GenomeAnnotation, Normalization, Sequencing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.1.1), GenomicFeatures(>= 1.16.3), plyr (>= 1.8.1), BiocGenerics(>= 0.10.0) |
| Imports | Biostrings(>= 2.32.1), GenomicRanges(>= 1.16.4), Rsamtools(>= 1.16.1), rtracklayer(>= 1.24.2), GenomicAlignments(>= 1.5.12) |
| LinkingTo | |
| Suggests | BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RNAprobR_1.6.0.tar.gz |
| Windows Binary | RNAprobR_1.6.0.zip |
| Mac OS X 10.9 (Mavericks) | RNAprobR_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RNAprobR/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/RNAprobR/ |
| Package Downloads Report | Download Stats |
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