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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HDF5Array")
In most cases, you don't need to download the package archive at all.
HDF5Array
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This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see HDF5Array.
An array-like container for convenient access and manipulation of HDF5 datasets
Bioconductor version: 3.4
This package implements the HDF5Array class for convenient access and manipulation of HDF5 datasets. In order to reduce memory usage and optimize performance, operations on an HDF5Array object are either delayed or executed using a block processing mechanism. The delaying and block processing mechanisms are independent of the on-disk backend and implemented via the DelayedArray class. They even work on in-memory array-like objects like DataFrame objects (typically with Rle columns), Matrix objects, or ordinary arrays or data frames, where they can improve performance.
Author: Hervé Pagès
Maintainer: Hervé Pagès <hpages at fredhutch.org>
Citation (from within R,
enter citation("HDF5Array")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HDF5Array")
Documentation
| Reference Manual |
Details
| biocViews | Annotation, Coverage, DataRepresentation, GenomeAnnotation, Infrastructure, Sequencing, Software |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2), methods, BiocGenerics(>= 0.15.3), S4Vectors(>= 0.9.43), IRanges(>= 2.7.6) |
| Imports | stats, rhdf5 |
| LinkingTo | |
| Suggests | Matrix, h5vcData, SummarizedExperiment, GenomicRanges, genefilter, BiocStyle, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MultiAssayExperiment |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | HDF5Array_1.2.1.tar.gz |
| Windows Binary | HDF5Array_1.2.1.zip |
| Mac OS X 10.9 (Mavericks) | HDF5Array_1.2.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/HDF5Array/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/HDF5Array/ |
| Package Downloads Report | Download Stats |
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