To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BgeeDB")
In most cases, you don't need to download the package archive at all.
BgeeDB
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see BgeeDB.
Annotation and gene expression data retrieval from Bgee database
Bioconductor version: 3.4
A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.
Author: Andrea Komljenovic [aut, cre], Julien Roux [aut, cre]
Maintainer: Andrea Komljenovic <andreakomljenovic at gmail.com>, Frederic Bastian <bgee at sib.swiss>
Citation (from within R,
enter citation("BgeeDB")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BgeeDB")
Documentation
| HTML | R Script | Vignette Title |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, GO, GeneExpression, GeneSetEnrichment, Microarray, Sequencing, Software |
| Version | 2.0.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
| License | GPL-2 |
| Depends | R (>= 3.3.0), topGO, tidyr |
| Imports | data.table, RCurl, digest, methods, stats, utils, dplyr, graph, Biobase |
| LinkingTo | |
| Suggests | knitr, BiocStyle, testthat, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | psygenet2r |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | BgeeDB_2.0.0.tar.gz |
| Windows Binary | BgeeDB_2.0.0.zip |
| Mac OS X 10.9 (Mavericks) | BgeeDB_2.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/BgeeDB/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/BgeeDB/ |
| Package Downloads Report | Download Stats |
Documentation »
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