To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("switchde")

In most cases, you don't need to download the package archive at all.

switchde

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see switchde.

Switch-like differential expression across single-cell trajectories

Bioconductor version: 3.4

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("switchde")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("switchde")

HTML	R Script	An overview of the switchde package
PDF		Reference Manual
Text		NEWS

biocViews	DifferentialExpression, GeneExpression, RNASeq, Regression, Software, Transcriptomics
Version	1.0.0
In Bioconductor since	BioC 3.4 (R-3.3) (0.5 years)
License	GPL (>= 2)
Depends	R (>= 3.3)
Imports	Biobase, dplyr, ggplot2, methods, stats
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr, scater
SystemRequirements
Enhances
URL	https://github.com/kieranrcampbell/switchde
BugReports	https://github.com/kieranrcampbell/switchde
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	switchde_1.0.0.tar.gz
Windows Binary	switchde_1.0.0.zip
Mac OS X 10.9 (Mavericks)	switchde_1.0.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/switchde/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/switchde/
Package Downloads Report	Download Stats

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