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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("JctSeqData")
In most cases, you don't need to download the package archive at all.
JctSeqData
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see JctSeqData.
Example Junction Count data for use with JunctionSeq
Bioconductor version: 3.4
Junction count data from an example dataset taken from a subset of the RNA-seq reads from six samples. Data was subsampled and modified to provide edge cases for testing and to reduce file sizes.
Author: Stephen Hartley [aut, cre] (PhD)
Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>
Citation (from within R,
enter citation("JctSeqData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("JctSeqData")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("JctSeqData")
| Example Walkthrough | ||
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | ExperimentData, GEO, Genome, RNASeqData, Rattus_norvegicus_Data, RepositoryData |
| Version | 1.4.0 |
| License | file LICENSE |
| Depends | R (>= 3.3) |
| Imports | |
| LinkingTo | |
| Suggests | knitr, BiocStyle, DESeq2, DEXSeq, edgeR, JunctionSeq |
| SystemRequirements | |
| Enhances | |
| URL | http://hartleys.github.io/JunctionSeq/ |
| BugReports | http://github.com/hartleys/JunctionSeq/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | JunctionSeq |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | JctSeqData_1.4.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/JctSeqData/ |
| Package Downloads Report | Download Stats |
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