To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SPLINTER")

In most cases, you don't need to download the package archive at all.

SPLINTER

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see SPLINTER.

Splice Interpreter Of Transcripts

Bioconductor version: 3.4

SPLINTER provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.

Author: Diana Low

Maintainer: Diana Low <dlow at imcb.a-star.edu.sg>

Citation (from within R, enter citation("SPLINTER")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SPLINTER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SPLINTER")

PDF	R Script	SPLINTER
PDF		Reference Manual
Text		NEWS

Details

biocViews	AlternativeSplicing, GeneExpression, RNASeq, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.4 (R-3.3) (0.5 years)
License	GPL-2
Depends	R (>= 3.3.0), grDevices, stats
Imports	graphics, ggplot2, seqLogo, Biostrings, biomaRt, GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz, IRanges, S4Vectors, GenomeInfoDb, utils, plyr, BSgenome.Mmusculus.UCSC.mm9
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	SPLINTER_1.0.0.tar.gz
Windows Binary	SPLINTER_1.0.0.zip
Mac OS X 10.9 (Mavericks)	SPLINTER_1.0.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/SPLINTER/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/SPLINTER/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

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Videos.
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R / CRAN packages and documentation

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