To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GoogleGenomics")

In most cases, you don't need to download the package archive at all.

GoogleGenomics

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see GoogleGenomics.

R Client for Google Genomics API

Bioconductor version: 3.4

Provides an R package to interact with the Google Genomics API.

Author: Cassie Doll [aut], Nicole Deflaux [aut], Siddhartha Bagaria [aut, cre]

Maintainer: Siddhartha Bagaria <sidb at google.com>

Citation (from within R, enter citation("GoogleGenomics")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GoogleGenomics")

HTML	R Script	Annotating Variants
HTML	R Script	Plotting Alignments
HTML	R Script	Reproducing Variant Annotation Results
PDF		Reference Manual
Text		NEWS
Text		LICENSE

biocViews	DataImport, Software, ThirdPartyClient
Version	1.6.0
In Bioconductor since	BioC 3.1 (R-3.2) (2 years)
License	Apache License (== 2.0) \| file LICENSE
Depends	R (>= 3.1.0), GenomicAlignments(>= 1.0.1), VariantAnnotation
Imports	Biostrings, GenomeInfoDb, GenomicRanges, IRanges, httr, rjson, Rsamtools, S4Vectors(>= 0.9.25)
LinkingTo
Suggests	BiocStyle, httpuv, knitr, rmarkdown, testthat, ggbio, ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL	https://cloud.google.com/genomics/
BugReports	https://github.com/Bioconductor/GoogleGenomics/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	GoogleGenomics_1.6.0.tar.gz
Windows Binary	GoogleGenomics_1.6.0.zip
Mac OS X 10.9 (Mavericks)	GoogleGenomics_1.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GoogleGenomics/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/GoogleGenomics/
Package Downloads Report	Download Stats

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