To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MEAL")
In most cases, you don't need to download the package archive at all.
MEAL
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see MEAL.
Perform methylation analysis
Bioconductor version: 3.4
Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.
Author: Carlos Ruiz [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonz<c3><a1>lez [aut]
Maintainer: Carlos Ruiz <carlos.ruiz at isglobal.org>
Citation (from within R,
enter citation("MEAL")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MEAL")
Documentation
| HTML | R Script | Introduction to MEAL |
| HTML | R Script | MEAL case example |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, Microarray, Software, WholeGenome |
| Version | 1.4.2 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.0), Biobase, MultiDataSet |
| Imports | GenomicRanges, SNPassoc, limma, DMRcate, snpStats, vegan, BiocGenerics, minfi, IRanges, S4Vectors, methods, doParallel, parallel, ggplot2 (>= 2.0.0), sva, permute |
| LinkingTo | |
| Suggests | testthat, IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData, MEALData, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MEAL_1.4.2.tar.gz |
| Windows Binary | MEAL_1.4.2.zip |
| Mac OS X 10.9 (Mavericks) | MEAL_1.4.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MEAL/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/MEAL/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
