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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")
In most cases, you don't need to download the package archive at all.
SeqVarTools
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see SeqVarTools.
Tools for variant data
Bioconductor version: 3.4
An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.
Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp
Maintainer: Stephanie M. Gogarten <sdmorris at u.washington.edu>, Xiuwen Zheng <zhengx at u.washington.edu>, Adrienne Stilp <amstilp at u.washington.edu>
Citation (from within R,
enter citation("SeqVarTools")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SeqVarTools")
| R Script | Introduction to SeqVarTools | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneticVariability, Genetics, SNP, Sequencing, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (3.5 years) |
| License | GPL-3 |
| Depends | SeqArray(>= 1.11.17) |
| Imports | grDevices, graphics, stats, methods, stringr, gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW, VariantAnnotation, Biobase, logistf |
| LinkingTo | |
| Suggests | BiocGenerics, BiocStyle, RUnit |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | GENESIS |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | SeqVarTools_1.12.0.tar.gz |
| Windows Binary | SeqVarTools_1.12.0.zip |
| Mac OS X 10.9 (Mavericks) | SeqVarTools_1.12.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/SeqVarTools/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/SeqVarTools/ |
| Package Downloads Report | Download Stats |
Documentation »
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