Functions that are needed by many other packages or which replace R functions.
Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon
| biocViews |
Bioinformatics, Infrastructure, Software |
| Version |
2.20.1 |
| In Bioconductor since |
BioC 1.6 (R-1.11) or earlier |
| License |
Artistic-2.0 |
| Depends |
R (>= 2.10), BiocGenerics(>= 0.3.2), utils |
| Imports |
methods, BiocGenerics |
| Suggests |
tools, tkWidgets, ALL, RUnit, golubEsets |
| System Requirements |
|
| URL |
|
| Depends On Me |
a4Base, a4Core, ACME, affy, affycomp, affycompData, affyContam, affycoretools, affyPLM, affyQCReport, AGDEX, Agi4x44PreProcess, AgiMicroRna, ALL, altcdfenvs, annaffy, AnnotationDbi, AnnotationForge, antiProfilesData, ArrayExpress, arrayMvout, ArrayTools, beadarray, beadarrayExampleData, beadarraySNP, bgx, BicARE, BiocCaseStudies, bioDist, BioMVCClass, BioNet, birta, bladderbatch, BrainStars, CAMERA, cancerclass, cancerdata, casper, Category, categoryCompare, CCl4, cellHTS, cellHTS2, ceu1kg, ceuhm3, CGHbase, CGHcall, CGHregions, charm, cheung2010, chimera, chroGPS, clippda, CLL, clusterStab, CMA, cn.farms, cn.mops, codelink, colonCA, convert, copa, davidTiling, ddCt, DESeq, DESeq2, DEXSeq, DFP, DLBCL, dressCheck, dsQTL, DSS, dualKS, dyebias, easyRNASeq, EBarrays, EDASeq, eisa, encoDnaseI, epigenomix, ExiMiR, fabia, fabiaData, factDesign, fastseg, fibroEset, flowClust, flowCore, flowWorkspace, frma, gaga, gaschYHS, GeneAnswers, GeneExpressionSignature, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, GeneSelector, geNetClassifier, genoset, GEOquery, GGdata, GOFunction, golubEsets, goProfiles, GOstats, GSEABase, GSEAlm, GSVAdata, GWASTools, hapFabia, harbChIP, HCsnip, HELP, hmyriB36, hopach, HTqPCR, htSeqTools, HTSFilter, humanStemCell, HybridMTest, iBMQ, idiogram, inSilicoDb, inSilicoMerging, isobar, iterativeBMA, Iyer517, kidpack, leeBamViews, leukemiasEset, LMGene, lumi, lumiBarnes, lungExpression, LVSmiRNA, macat, maDB, MAQCsubset, MAQCsubsetAFX, MAQCsubsetILM, maSigPro, MergeMaid, metagenomeSeq, methyAnalysis, methylumi, Mfuzz, MiChip, MineICA, minfi, miRNATarget, MLInterfaces, MmPalateMiRNA, MSnbase, Mulcom, multtest, mvoutData, Neve2006, NOISeq, NormqPCR, nucleR, oligo, oneChannelGUI, OrderedList, OTUbase, OutlierD, PADOG, PAnnBuilder, panp, pcaMethods, pcot2, pdInfoBuilder, pdmclass, PGSEA, phenoTest, plgem, PLPE, plrs, prada, PREDA, PREDAsampledata, ProData, PROMISE, puma, pumadata, qpcrNorm, R453Plus1Toolbox, RbcBook1, rbsurv, ReadqPCR, reb, RefPlus, Resourcerer, rHVDM, Ringo, Risa, Rmagpie, rMAT, RNAinteract, rnaSeqMap, RpsiXML, rqubic, RTCA, RTopper, Rtreemix, safe, SCAN.UPC, SeqGSEA, sigaR, siggenes, simpleaffy, SpeCond, SPEM, SpikeInSubset, spkTools, TDARACNE, tigre, tilingArray, topGO, tspair, tweeDEseqCountData, VegaMC, vsn, waveTiling, webbioc, xcms, XDE, yeastCC |
| Imports Me |
ABarray, aCGH, adSplit, affy, affyILM, affyQCReport, AgiMicroRna, annmap, annotate, AnnotationDbi, AnnotationForge, annotationTools, ArrayExpressHTS, arrayQualityMetrics, ArrayTools, attract, betr, bigmemoryExtras, biocViews, BioSeqClass, BiSeq, BrainStars, bsseq, Category, categoryCompare, ccTutorial, cgdv17, CGHnormaliter, charm, ChIPXpress, ChromHeatMap, clipper, ConsensusClusterPlus, crlmm, cycle, DESeq2, EBarrays, ecolitk, epigenomix, farms, ffpe, flowCore, flowFlowJo, flowFP, flowMeans, flowQB, flowStats, flowType, flowUtils, flowViz, flowWorkspace, frma, frmaTools, gCMAP, gCMAPWeb, gcrma, genefilter, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, genomeIntervals, GenomicFeatures, GEOsubmission, GGBase, ggbio, GGtools, girafe, globaltest, gmapR, GOFunction, GOstats, GSEABase, GSRI, GSVA, Gviz, Harshlight, HEM, HiTC, hopach, HTqPCR, IdMappingAnalysis, iFlow, imageHTS, KEGGdzPathwaysGEO, lapmix, LiquidAssociation, lumi, maanova, makecdfenv, maSigPro, mBPCR, MCRestimate, metaArray, methyAnalysis, methylumi, MiChip, MinimumDistance, MiPP, MmPalateMiRNA, multiscan, mzR, ncdfFlow, nucleR, oligoClasses, OrderedList, PADOG, PAnnBuilder, panp, pcaGoPromoter, PCpheno, piano, plateCore, plier, ppiStats, prada, PROMISE, puma, pvac, pvca, qpgraph, QuasR, R453Plus1Toolbox, randPack, ReadqPCR, ReportingTools, RforProteomics, RGalaxy, Rmagpie, rMAT, rols, rqubic, rSFFreader, Rtreemix, SAGx, ShortRead, simpleaffy, SLGI, SNPchip, spade, spkTools, splicegear, synapter, TEQC, tigre, timecourse, topGO, TSSi, twilight, VanillaICE, VariantAnnotation, virtualArray, XDE, xmapcore |
| Suggests Me |
annotate, betr, BiocCaseStudies, BiocGenerics, biocViews, breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, BSgenome, Category, DART, dyebiasexamples, estrogen, farms, genefilter, genefu, geneplotter, GlobalAncova, globaltest, Heatplus, les, nem, OSAT, pkgDepTools, rheumaticConditionWOLLBOLD, ROC, survcomp, tkWidgets, TypeInfo, vbmp, widgetTools, yeastExpData, yeastRNASeq |
